PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0210s0070.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 334aa    MW: 36565.7 Da    PI: 6.1969
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0210s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039268290123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++Cp+C k+F +   L  H r+H
  SapurV1A.0210s0070.1.p 268 FQCPYCFKVFGSGQALGGHKRSH 290
                             89**************9999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-5328IPR007087Zinc finger, C2H2
SMARTSM003550.45426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-6224290No hitNo description
SMARTSM0035593224244IPR015880Zinc finger, C2H2-like
PfamPF139120.0024224244IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078224254IPR007087Zinc finger, C2H2
SMARTSM003550.071268290IPR015880Zinc finger, C2H2-like
PfamPF139129.4E-11268291IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619268290IPR007087Zinc finger, C2H2
PROSITE patternPS000280270290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MERHKCRLCV RAFPNGRALG GHMKAHLAAT RHQLGLDRNE SSSSSYSSSA GEEEVQEEQG  60
IIKTKEAADE KSLAYGLREN PKKSCRLADP EFSFAVDTGS VVVQDRESET ESRNPTRRRS  120
KRIRKSCGFG ESQKQDFEVK KVVDFKNPSW VESSAAAEPE PVSSVSDTSP EEDVARCLMM  180
FSRDVWMRND EEEDQEQGGK DGEKSVDMLE EAEEIKVNKI RGKFRCEKCM KLFRSSRALG  240
GHKRICSLNA AEARTIAAAG GDANDRIFQC PYCFKVFGSG QALGGHKRSH LTGSSTSSNA  300
AAAAASAKLE SNLIDLNLPA PVEDDEFSVV SDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0210s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463000.10.0zinc finger protein ZAT9
TrEMBLU5GPT80.0U5GPT8_POPTR; C2H2 family protein
STRINGPOPTR_0001s15790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-43C2H2-like zinc finger protein