PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0188s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 239aa    MW: 26206.3 Da    PI: 5.3528
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0188s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-193989155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            + ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  SapurV1A.0188s0060.1.p 39 CSYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAATAYDAAARKLYG 89
                            67*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.4E-143989IPR001471AP2/ERF domain
CDDcd000185.04E-233999No hitNo description
SMARTSM003801.0E-3540103IPR001471AP2/ERF domain
PROSITE profilePS5103222.3794097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-304098IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-214098IPR016177DNA-binding domain
PRINTSPR003679.6E-104152IPR001471AP2/ERF domain
PRINTSPR003679.6E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSKSIMSGYG EKKQFKKPAQ ASSRKGCMRG KGGPENALCS YKGVRQRTWG KWVAEIREPN  60
RGARLWLGTF DTSHEAATAY DAAARKLYGS EAKLNLPDLQ GNNCQFPASP ANSQVTQMTT  120
QPSQIIHNYS STTSTCLSNT PSIESNEMAP VLYSHDPAMS FCNEGVDSNG MEAVNFGRSE  180
SEIKEFWSNF NVNIPFDDSI WDEAAMSINF PVLEDPGIFA GNLMEGTGRD TLQTPWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-184197360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0188s0060.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559610.0EF155961.1 Populus trichocarpa putative DRE-binding protein 5 (DREB5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048848.11e-141PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ24e-51DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA9XBG61e-137A9XBG6_POPTR; Putative DRE-binding protein 5
STRINGPOPTR_0005s25470.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]