PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0187s0430.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 114aa    MW: 12886.8 Da    PI: 5.1048
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0187s0430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.6e-1137983290
                            --SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                      B3 32 esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                            + +t   +d++gr+We+kl+ r+++     v+++ W ++v+++gL +gD+++++++++ +++
  SapurV1A.0187s0430.1.p 37 NAITFNARDPTGRVWEFKLCTRNHGPYkkPVIRGDWLDYVREKGLTVGDVIILTMVEDaENG 98
                            45788999***********88666544569************************88775544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-103096IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-113097IPR015300DNA-binding pseudobarrel domain
CDDcd100177.52E-123394No hitNo description
PfamPF023629.7E-83897IPR003340B3 DNA binding domain
PROSITE profilePS508638.51544107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MAQIDIVNKD LTFYDITQCF AYPACSLWAF PMGRGQNAIT FNARDPTGRV WEFKLCTRNH  60
GPYKKPVIRG DWLDYVREKG LTVGDVIILT MVEDAENGVS YNIRVEPNLE LAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0187s0430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003253.12e-53PREDICTED: uncharacterized protein LOC105110050
TrEMBLB9HE559e-57B9HE55_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02840.12e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14473313