PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0167s0190.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 165aa    MW: 18482.6 Da    PI: 9.0579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0167s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-173483255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  SapurV1A.0167s0190.1.p 34 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 83
                            69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-213492IPR016177DNA-binding domain
PROSITE profilePS5103222.2073491IPR001471AP2/ERF domain
SMARTSM003806.5E-373497IPR001471AP2/ERF domain
PRINTSPR003677.5E-123546IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-303592IPR001471AP2/ERF domain
CDDcd000187.04E-283593No hitNo description
PfamPF008476.2E-113583IPR001471AP2/ERF domain
PRINTSPR003677.5E-127393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEGGCYTSSS PSGSTSATRI EKRKHSRKQN QEKPYRGIRM RKWGKWVAEI REPNKRSRIW  60
LGSYSTPVAA ARAYDTAVFY LRGPSARLNF PDLIHQEDEL CDVSAAFIRQ KATEVGAKVD  120
ALQTALHASP GDNPPTNRLV LSEKPDLNEY PENSDEESSK EDQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153391463ATERF1
3gcc_A2e-153391463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0167s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559491e-156EF155949.1 Populus trichocarpa RAP2-like protein (RAP2L8) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017174.12e-94PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC302e-50RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA9PL984e-91A9PL98_POPTR; ERF family protein
STRINGPOPTR_0002s12550.14e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.12e-52related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]