PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0154s0220.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 207aa    MW: 21967.4 Da    PI: 5.0424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0154s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-164088355
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            ++GVr+++ +g+Wv+eIr+p+    +  r++lg+f ++e+Aa a++ a+++l+g
  SapurV1A.0154s0220.1.p 40 FRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFPSPEMAAVAYDVAALALKG 88
                            89***888.8*********94....468***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-293998IPR001471AP2/ERF domain
SMARTSM003801.4E-3339102IPR001471AP2/ERF domain
PROSITE profilePS5103222.1283996IPR001471AP2/ERF domain
PRINTSPR003671.3E-104051IPR001471AP2/ERF domain
CDDcd000187.13E-304098No hitNo description
SuperFamilySSF541719.81E-204098IPR016177DNA-binding domain
PfamPF008471.8E-94088IPR001471AP2/ERF domain
PRINTSPR003671.3E-107898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MQDSQQRKTS RPGSGSGSSS GRTASVAVTA GSISGPQRAF RGVRRRSSGK WVSEIREPKK  60
PNRIWLGTFP SPEMAAVAYD VAALALKGQN AELNFPNSAA SLPVPASTSP RDIQSAAASA  120
AAAIGAAKDA LGIPNTGDAN KMEQEFRPTV DDHFVDEDLI FDMPNVLVNM AEGMLLSPPR  180
LDIAGDHDET TTAYDSTEDQ NLWKFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1440971573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0154s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559370.0EF155937.1 Populus trichocarpa TINY-like protein (TINYL18) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322550.13e-99ethylene-responsive transcription factor ERF024
SwissprotQ9SJR01e-50ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA9PL878e-98A9PL87_POPTR; TINY-like protein
STRINGPOPTR_0016s02010.11e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.15e-42ERF family protein