PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0144s0020.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 251aa    MW: 28409.8 Da    PI: 8.077
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0144s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.5e-2190140155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+G+r+++ +g+W+AeIrdp++    +r++lg++ taeeAaka+++a+k+++g
  SapurV1A.0144s0020.2.p  90 SVYRGIRQRS-WGKWAAEIRDPYK---GARVWLGTYSTAEEAAKAYDEAAKRIRG 140
                             78*****999.**********865...4************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-1490140IPR001471AP2/ERF domain
CDDcd000184.30E-3290148No hitNo description
SuperFamilySSF541712.88E-2290149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3191149IPR001471AP2/ERF domain
PROSITE profilePS5103223.39391148IPR001471AP2/ERF domain
SMARTSM003802.1E-3691154IPR001471AP2/ERF domain
PRINTSPR003675.8E-1192103IPR001471AP2/ERF domain
PRINTSPR003675.8E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCGGAIISDF VAVKHGRRLT VEDLRPELDL FSEYLRFDLH NNGSKKDPSN LSLPQKPSHT  60
NQVQQEKVEK PSHVTDKENG NRKAQRTRKS VYRGIRQRSW GKWAAEIRDP YKGARVWLGT  120
YSTAEEAAKA YDEAAKRIRG DKAKLNFPSQ TPPTPEAPPP AKKRCILSPE TASVASSCTQ  180
PPQEPYFGYE NEDYELKEQV LKLESFLGLE PDQMAAQLRG NSGDNHESGD LWMLDDLVTH  240
HQYQRQLNYL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2292148360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2192148663ATERF1
3gcc_A1e-2192148663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0144s0020.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010669.11e-147PREDICTED: ethylene-responsive transcription factor RAP2-3-like
TrEMBLU5G9D11e-143U5G9D1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s23260.11e-144(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-40ethylene-responsive element binding protein