PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0138s0160.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 270aa    MW: 30661.3 Da    PI: 5.525
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0138s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.13e-3810107198
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             aCa+Ck++rrkC+++C+lapyfp eqpk f+n+h+lFG++++l++l++l+  ++e+am+s++y+A++r r Pv+G++g+i +l+ q+
  SapurV1A.0138s0160.1.p  10 ACASCKYQRRKCSSECPLAPYFPPEQPKMFQNAHRLFGVRKILRILENLDSPQKEEAMRSIIYQANIRDRFPVHGCLGIICQLHFQI 96 
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallk 98 
                             +q+++el ++ 
  SapurV1A.0138s0160.1.p  97 RQMEEELRAVY 107
                             ******98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.7939110IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3610106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTLKGGTSQA CASCKYQRRK CSSECPLAPY FPPEQPKMFQ NAHRLFGVRK ILRILENLDS  60
PQKEEAMRSI IYQANIRDRF PVHGCLGIIC QLHFQIRQME EELRAVYAHL EMYRQHHHHQ  120
IEALTEDVPS QLELGMALPQ PCLAQQYSYS MGSNIGYSSS FLDSNENVGN SLWGQHPYAT  180
NNNTNSKPVI QSQLVASQPL STQQEVVQDY DEMHSFFDII DDRQSYIETK EPYDSSSEES  240
LKDTTQSMEH VAENELKSAA ACFSLTSVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2761147113LOB family transfactor Ramosa2.1
5ly0_B3e-2761147113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0138s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042621.10.0PREDICTED: LOB domain-containing protein 27
SwissprotQ9STS65e-65LBD27_ARATH; LOB domain-containing protein 27
TrEMBLU5FZC11e-180U5FZC1_POPTR; Uncharacterized protein
STRINGPOPTR_0012s07390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44152958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-67LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]