PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0133s0330.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 287aa    MW: 32704.5 Da    PI: 5.4129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0133s0330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-202878155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            ++y+GVr++  +g+WvAeIr+p+    r  r +lg+f taeeAa a+++a+++l+g
  SapurV1A.0133s0330.1.p 28 CDYRGVRQRT-WGKWVAEIREPK----RrSRLWLGSFATAEEAAMAYDEAARRLYG 78
                            68*****999.**********83....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.21E-312888No hitNo description
PfamPF008471.5E-132878IPR001471AP2/ERF domain
SMARTSM003809.5E-382992IPR001471AP2/ERF domain
PROSITE profilePS5103222.5762986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-303087IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-213087IPR016177DNA-binding domain
PRINTSPR003673.0E-103041IPR001471AP2/ERF domain
PRINTSPR003673.0E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MENCRESPLK PWKKGPTRSK GGPQNAMCDY RGVRQRTWGK WVAEIREPKR RSRLWLGSFA  60
TAEEAAMAYD EAARRLYGPN AYLNLPHLQS NSKPPNKSHK FKWIPCNNFI SMFPSCALLN  120
IHAHPSVHVI HQRLQELKNN RALNQPSVAS SSSSSESRTE VIIASDENHV AKVSVAEKDE  180
EISSETMLLT NHDEKPQIDL NEFLQQLGIL KEEKQPDNND VNEDFMEPES SRIDQNELTA  240
LADKSFDWDS MNEMHGIADH QGEELNSFPV YDIQEELAFP TSIWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-183092668ATERF1
3gcc_A4e-183092668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0133s0330.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826860.0AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308045.30.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX57e-87DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A2K1ZXA50.0A0A2K1ZXA5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-76ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]