PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0126s0330.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 217aa    MW: 23627.3 Da    PI: 8.5043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0126s0330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-202980156
                     AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            ++y+GVr ++ +g+++AeIrd ++    ++r++lg+f++ae+Aa+a++ a+++l+g+
  SapurV1A.0126s0330.1.p 29 PRYRGVRKRP-WGKFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDTAARSLRGA 80
                            68********.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-122979IPR001471AP2/ERF domain
CDDcd000187.00E-322989No hitNo description
SuperFamilySSF541711.83E-223089IPR016177DNA-binding domain
PROSITE profilePS5103223.4993087IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-323089IPR001471AP2/ERF domain
SMARTSM003801.8E-363093IPR001471AP2/ERF domain
PRINTSPR003674.1E-113142IPR001471AP2/ERF domain
PRINTSPR003674.1E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRTRTTTKQ AEDPNGSATQ NMLVIAKEPR YRGVRKRPWG KFAAEIRDPW KKTRVWLGTF  60
DSAEDAARAY DTAARSLRGA KAKTNFPTSA TNQLFNHPSQ DPADPFLDHH SINPQRPTSS  120
SLSSTVESFS GPRPLQPTTM KSGSGPRRSH PRIPPVVPED CHSDCDSSSS VVDDRDIASA  180
ASSLCRKPLP FDLNLPPLDQ VDFGSGDDLH CTALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-222687163ATERF1
3gcc_A4e-222687163ATERF1
5wx9_A6e-222487872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0126s0330.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468370.0EF146837.1 Populus trichocarpa clone WS01214_L17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298817.11e-109ethylene-responsive transcription factor 3
SwissprotO803391e-53ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLJ7LF141e-108J7LF14_POPCA; ERF3
STRINGPOPTR_0001s36610.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-30ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]