PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0124s0170.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 191aa    MW: 21112.5 Da    PI: 8.0527
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0124s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.4e-2197149156
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             s+y+GVr+++ +g+++AeIrdp++ng  +r +lg++ t+e+Aa a+++a+ k++g+
  SapurV1A.0124s0170.1.p  97 SQYRGVRRRP-WGKYAAEIRDPKKNG--ARMWLGTYETPEDAALAYDQAAFKIRGN 149
                             78********.***********9998..*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-1497148IPR001471AP2/ERF domain
CDDcd000182.93E-3197158No hitNo description
SuperFamilySSF541717.85E-2497157IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-3298157IPR001471AP2/ERF domain
PROSITE profilePS5103224.01298156IPR001471AP2/ERF domain
SMARTSM003808.3E-3898162IPR001471AP2/ERF domain
PRINTSPR003671.9E-1399110IPR001471AP2/ERF domain
PRINTSPR003671.9E-13138158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSQGGNNSLG SEDLDFLESI QQYLVSTTDR DFDTLMSTCP RMENSEGTAS SFCSDHDILF  60
NDSMTSTTLA VFESDPQGQG IPAVEVACKS NARPKGSQYR GVRRRPWGKY AAEIRDPKKN  120
GARMWLGTYE TPEDAALAYD QAAFKIRGNK AKLNFPHLIG STEYEPVRVT SKRRSPEPAL  180
VHDGSPKRRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3195163270ATERF1
3gcc_A1e-3195163270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171189KRRSPEPALVHDGSPKRRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0124s0170.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375130.11e-121ethylene-responsive transcription factor 13
SwissprotQ8L9K19e-50ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLB9MV941e-120B9MV94_POPTR; Uncharacterized protein
STRINGPOPTR_0014s04640.11e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-52ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]