PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0118s0170.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 246aa    MW: 27216.6 Da    PI: 10.3968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0118s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1963113256
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+ta eAaka+++a+++++g+
  SapurV1A.0118s0170.1.p  63 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAVEAAKAYDKAAREYRGA 113
                             69*******.**********8...557**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-2763120No hitNo description
Gene3DG3DSA:3.30.730.102.9E-3063120IPR001471AP2/ERF domain
PROSITE profilePS5103222.43163120IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2163120IPR016177DNA-binding domain
PfamPF008474.6E-1363112IPR001471AP2/ERF domain
SMARTSM003802.8E-3263126IPR001471AP2/ERF domain
PRINTSPR003671.7E-106475IPR001471AP2/ERF domain
PRINTSPR003671.7E-1086102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVTTRLFVQR YSRDASSRRH GRIYFSIVSS SGFRKMAPRK DNIDNGNCSL KKASGDHDKK  60
EIHYRGVRKR PWGRYAAEIR DPGKKTRVWL GTFDTAVEAA KAYDKAAREY RGAKANTNFA  120
LAEKVVYYND EKQSSSQSST VESSSSPVVS AVARDATHQV GGVMGMGRFP FVLQQQQPNV  180
NAVGPVWFLD SVKPELVAQR FPVRFDPVGL EGGAQSDSDS SSVIDFKPRR SIRDLDLNLP  240
PPADA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1963121261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1960121264ATERF1
3gcc_A1e-1960121264ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0118s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310408.21e-106ethylene-responsive transcription factor 4
TrEMBLA0A3N7FDB11e-105A0A3N7FDB1_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01110.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-33erf domain protein 9