PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0116s0210.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 244aa    MW: 26215.9 Da    PI: 8.1514
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0116s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.51.6e-312103197
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Ga+g++++
  SapurV1A.0116s0210.1.p   2 SCNGCRVLRKGCSENCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLFEACGRTVNPVNGAAGLLWT 88 
                             6************************************************************************************** PP

                  DUF260  83 lqqqleqlkaelall 97 
                             ++++++q+++e++l+
  SapurV1A.0116s0210.1.p  89 GNWHVCQAAVETVLR 103
                             *********999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7411107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PSLFQSLLFE ACGRTVNPVN GAAGLLWTGN WHVCQAAVET VLRGGALLPM PGSLTGGGGG  120
SPPPSSDETS EVEVACTDMW RLQDPNPNHH PRFSISRSRL SPKRTRTEEP VAVKLQQNDL  180
DLRLTPSFPL KGLGYKQEIR RPGTPSMNSA ESVTTNTACF DSAGLGDQYG VVGGETKLLK  240
LFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0116s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142830.0AC214283.1 Populus trichocarpa clone POP036-B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015565.11e-150PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN232e-93LBD38_ARATH; LOB domain-containing protein 38
TrEMBLU5G4U01e-148U5G4U0_POPTR; LBD family protein
STRINGPOPTR_0007s10010.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-84LOB domain-containing protein 38