PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0110s0280.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 357aa    MW: 39980.9 Da    PI: 10.1736
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0110s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.8e-32289346359
                             -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  SapurV1A.0110s0280.1.p 289 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCLEDPSMLIVTYEGEHNHS 346
                             9*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-18240285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.7E-34275346IPR003657WRKY domain
PROSITE profilePS5081129.964282348IPR003657WRKY domain
SuperFamilySSF1182902.75E-27285346IPR003657WRKY domain
SMARTSM007747.7E-39287347IPR003657WRKY domain
PfamPF031063.1E-27289345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEEVEKVHKA AIESCNRVIG LLCQEKDQIQ GRNLVVETGE TVFKFKRVIS LLSAGLGHGR  60
VRKLKKLRSS LPQNIFLDSP NCKTILAPKP LQMVPPNFLE APLTDMGAKS KPSIQISQKM  120
LLEDPVLELN SNISPSLQIM QAKPPQNFQL VQQHQQIQRM HFQQQQQQQQ MKYQADRVYS  180
MSNGGINLKF DGSTCTPTMS STRSFISSLS MDGTVSNFDG DSFHLIGMPH SSDHISQQTR  240
RRCSGRGEDG NAKCASSGKC HCSKRRKLRV KRSIKVPAIS NKVADIPPDE YSWRKYGQKP  300
IKGSPHPRGY YKCSSLRGCP ARKHVERCLE DPSMLIVTYE GEHNHSRLIS SQSAHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-202853451271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0110s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774450.0GQ377445.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038553.10.0PREDICTED: probable WRKY transcription factor 74
SwissprotQ9SR071e-129WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLC9DI140.0C9DI14_9ROSI; WRKY transcription factor 25
STRINGPOPTR_0013s03990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-125WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]