PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0099s0370.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 340aa    MW: 37248.5 Da    PI: 8.3221
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0099s0370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-1494138147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             r +WT++E++++++a +++  + Wk+I + +g  +t kq++s+ qky
  SapurV1A.0099s0370.1.p  94 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVKQIRSHAQKY 138
                             789*****************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-1688144IPR009057Homeodomain-like
PROSITE profilePS5129415.9289143IPR017930Myb domain
TIGRFAMsTIGR015571.2E-1892141IPR006447Myb domain, plants
SMARTSM007171.1E-1193141IPR001005SANT/Myb domain
PfamPF002491.1E-1294138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-794138IPR009057Homeodomain-like
CDDcd001673.56E-996139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVSVNPNPAQ GFRFFHPVNI SNMGLPCLES LPPPPPPPPT TTGATPTYTA TASSTCNNTV  60
STANTTSNHN NTVMSFSEDP NKKIRKPYTI TKSRESWTEQ EHDKFLEALQ LFDRDWKKIE  120
AFVGSKTVKQ IRSHAQKYFL KVQKSGTSEH VPPPRPKRKA AHPYPQKASK SDTTSDPGNP  180
ITSGASSTWS FNSGPPVSMS HMTPDDAGLA GPATAYKCCY NSSNESTPKT WQTGKINDNK  240
DQGKPERVLP DFAQVYSFIG SVFDPNASDH LQRLKQMDPI NLETVLLLMR NLSINLTSPE  300
FEDHRRLLAS YDVDSDKENA GGSHSNSSVD NLGNPIPAM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0099s0370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684812e-81EF468481.1 Medicago truncatula MYB transcription factor MYB40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023280.10.0PREDICTED: protein REVEILLE 5-like
SwissprotQ8H0W31e-99RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2K2BJT10.0A0A2K2BJT1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s16460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.27e-87MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]