PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0099s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 305aa    MW: 34747.2 Da    PI: 5.1823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0099s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.7e-21106155255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +grW+AeIrdp+    r +r +lg+f+taeeAa a+++a+ +++g
  SapurV1A.0099s0060.1.p 106 RYRGVRQRP-WGRWAAEIRDPY----RrARLWLGTFDTAEEAAMAYDQAAIRIKG 155
                             8********.**********75....34***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.84E-32105162No hitNo description
SMARTSM003802.4E-38106169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-31106163IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-22106163IPR016177DNA-binding domain
PfamPF008479.6E-15106155IPR001471AP2/ERF domain
PROSITE profilePS5103224.329106163IPR001471AP2/ERF domain
PRINTSPR003671.6E-11107118IPR001471AP2/ERF domain
PRINTSPR003671.6E-11129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MNRFSTKYTE HKTVTNKLVK WEDSKATRIV RISVTDDNAT DSSGDENEES KRHHPRVRKH  60
INEIRITNSG SDRAAEDAKK SSKVVSRQQV VKNISRDQSY YPGVKRYRGV RQRPWGRWAA  120
EIRDPYRRAR LWLGTFDTAE EAAMAYDQAA IRIKGPDAQT NFTKPPVSKQ HTRDVDINVN  180
ISGYDSGKES HNSLCSPTSV LRFQSTEEPG AESQVQSDCY WRIPTQEEVV REESIKVGDD  240
DDECLVTDPS CLGEFWDFEN PAPIFFEECS VPGTVSREDY ADISVHFDGD FGSCLWDVDK  300
YFEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20105162159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20105162462ATERF1
3gcc_A2e-20105162462ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0099s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080940.0AC208094.1 Populus trichocarpa clone JGIACSB09-L10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301396.10.0ethylene-responsive transcription factor CRF5 isoform X1
TrEMBLA0A3N7G3J30.0A0A3N7G3J3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s16900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.16e-43cytokinin response factor 5