PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0093s0420.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 473aa    MW: 51948.2 Da    PI: 8.0868
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0093s0420.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.1e-11103127226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             +++ C +++ t tCk+Gd+CkF H+
  SapurV1A.0093s0420.1.p 103 GEKDCAHYMLTRTCKFGDTCKFDHP 127
                             7889********************9 PP

2zf-CCCH32.21.8e-10154180127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++ C++f++t  CkyG +CkF+H++
  SapurV1A.0093s0420.1.p 154 PGEPDCPYFMKTYRCKYGLNCKFNHPK 180
                             5789*********************96 PP

3zf-CCCH34.14.6e-11204226527
                             --SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                              C f+++tG Ck+G++CkF+H++
  SapurV1A.0093s0420.1.p 204 HCAFYMKTGKCKFGASCKFHHPK 226
                             5********************96 PP

4zf-CCCH37.63.8e-12280304327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             ++ C+f+++tG CkyG++C+++H++
  SapurV1A.0093s0420.1.p 280 EVDCPFYLKTGSCKYGATCHYNHPE 304
                             689********************96 PP

5zf-CCCH33.66.8e-11361385226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             ++ +C+f++rtG+Ck+G rC + H+
  SapurV1A.0093s0420.1.p 361 GQTECDFYMRTGECKFGVRCMYDHP 385
                             6789********************8 PP

6zf-CCCH39.97.3e-13417438627
                             -SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                             C+++++tGtCkyG++CkF H+p
  SapurV1A.0093s0420.1.p 417 CPYYMKTGTCKYGATCKFDHPP 438
                             ********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.001101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.887101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5102128IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001107126IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-4153180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042153181IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-8155180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5158183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4159181IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676199227IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8203226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6203227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5205225IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314277305IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9280304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5281305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5283304IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5359386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5359388IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892359387IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8361385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4365385IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6411438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666411439IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6415438IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5417436IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10417438IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MYLKQRDTAL KYSVDRGVAS AASAATSPHL SYWPPPHGVD VSSAVESLVP GLKRTPEVLY  60
HPTLLGAHSM IGQSEDWYST NSLAKRLRFK TTSHFPIYPQ RPGEKDCAHY MLTRTCKFGD  120
TCKFDHPVWV PEGGIPDWKE IPLIATSENF PERPGEPDCP YFMKTYRCKY GLNCKFNHPK  180
EKLFLGASEN SSVSALPERP SEPHCAFYMK TGKCKFGASC KFHHPKDIQI PLSGLGNDNG  240
VQTDSVVKNE EITGDFNMIN SPVTPALLHN SKGLPIRVGE VDCPFYLKTG SCKYGATCHY  300
NHPERTAINP PAAAIGHPII APSMANRNFG VFNPAASIYQ TIDPRLSMLG VGPTFYPQRP  360
GQTECDFYMR TGECKFGVRC MYDHPIDRSA PTEKQIQQQT VKLTLAGLPR REGAVHCPYY  420
MKTGTCKYGA TCKFDHPPPG EVMAIATSLD AAVLGAEAGI AHAQWEGGSS HG*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0093s0420.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014515.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A3N7FSU10.0A0A3N7FSU1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)