PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0092s0230.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YC
Protein Properties Length: 219aa    MW: 24717 Da    PI: 6.4165
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0092s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC166.63.2e-52381412102
                   NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                              +sfw++q   i+k+tdfknh+lPlarikki+ka+edvkmisaeaPv++++ace+fileltl+sw+h+eenkrrtl+k+diaaa+tr
  SapurV1A.0092s0230.1.p  38 RQSFWTNQykeIDKVTDFKNHSLPLARIKKIMKAEEDVKMISAEAPVIFARACEMFILELTLQSWNHTEENKRRTLQKNDIAAAITR 124
                             589****999999************************************************************************** PP

                   NF-YC  86 tdifdflvdivprdelk 102
                             tdifd+lvdivpr+++k
  SapurV1A.0092s0230.1.p 125 TDIFDLLVDIVPREDMK 141
                             *************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.37E-3221131IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.6E-3652123IPR009072Histone-fold
PfamPF008081.8E-2059122IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDQQGYGTNP YQPNHMPAAS NPGSQIHQQQ QQQLQQQRQS FWTNQYKEID KVTDFKNHSL  60
PLARIKKIMK AEEDVKMISA EAPVIFARAC EMFILELTLQ SWNHTEENKR RTLQKNDIAA  120
AITRTDIFDL LVDIVPREDM KDEALASIPR GTIPVGGPVD ALPYCYMPHP HASQVGNPGM  180
IMGKPVTDPA MYAQQSHPYM AQHMWPQGSE QQPSPSDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B3e-3952137994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C3e-3952137994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
1n1j_B4e-39521371297NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023571.11e-142PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_011023572.11e-142PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B23e-85NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLB9I7X71e-141B9I7X7_POPTR; HEME ACTIVATED protein 5C
STRINGPOPTR_0013s02580.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.47e-84nuclear factor Y, subunit C9