PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0081s0430.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 307aa    MW: 33625.8 Da    PI: 8.7869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0081s0430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-173382255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ++ GVr+++ +g+W AeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  SapurV1A.0081s0430.1.p 33 KFVGVRQRP-SGKWIAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 82
                            799******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.6123390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-273390IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-193391IPR016177DNA-binding domain
SMARTSM003807.3E-363396IPR001471AP2/ERF domain
PfamPF008475.2E-123382IPR001471AP2/ERF domain
CDDcd000182.81E-313392No hitNo description
PRINTSPR003675.6E-83445IPR001471AP2/ERF domain
PRINTSPR003675.6E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEFHQLRKQP RGVSPSKPSK FKERCSSNSS KNKFVGVRQR PSGKWIAEIK DTTQKIRMWL  60
GTFETAEEAA RAYDEAACLL RGSNTRTNFN THVSSDSPIS AKIRNLLNHK RSLKQNPSTT  120
SSSAKSTTKA STIGSTTSSF NSSMGSFLPN NTNVDSFPSS IASHAGYFNG IIQEDQMFDN  180
AYRPDLSGCC AGGLEPVTSQ FHPSCSFPSG LDPPIPYIQQ GMELPKNVGL LSDASSSVEL  240
AEFERMNAER QVPASFYVMN GVKGYFENAN ESSEALWDLP ASVNCSVLVN SLKIKWMKDI  300
WAAAMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-143495668ATERF1
3gcc_A5e-143495668ATERF1
5wx9_A5e-142889971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0081s0430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453111.11e-161ethylene-responsive transcription factor RAP2-11
TrEMBLB9GY711e-160B9GY71_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21090.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-31related to AP2 11