PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0079s0550.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 457aa    MW: 51580.3 Da    PI: 8.8797
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0079s0550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP150.31.3e-461182743136
                     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec.eaess 78 
                             ++kdrhskihT++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+ ikelt++          s++s+s + ++e++
  SapurV1A.0079s0550.1.p 118 TGKDRHSKIHTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSvprvrrrcsiSADSKSVSsTSERE 204
                             68*************************************************************777766654422222111211222 PP

                     TCP  79 sssasnsssg....................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                                                           ++  +++k+k+s+k ++ + nl + +sr+karararertre+m+++  +
  SapurV1A.0079s0550.1.p 205 ---------VvsgikppetdgdkrgaeakkDSLVTNPKEKRSKKVHKPVFNLVDrDSREKARARARERTRERMKNQGTD 274
                             .........1233334444566677777765555555666666666666888888********************9766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-45118270IPR005333Transcription factor, TCP
PROSITE profilePS5136937.214119177IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.374250267IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MFSSSSSFSP FDQYANHTMV ASMENPSSIE SCSQTFLRHF PDLFLDDNDL LVGELLSQQQ  60
QQQQQQQQEV LGSNTALAAE ANDPHTIPSA SNEEAKINNK KKKSNVDTSK QRIRQRRTGK  120
DRHSKIHTAQ GPRDRRMRLS LQIARKFFDL QDMLGFDKAS KTIEWLFTKS KAGIKELTDS  180
VPRVRRRCSI SADSKSVSST SEREVVSGIK PPETDGDKRG AEAKKDSLVT NPKEKRSKKV  240
HKPVFNLVDR DSREKARARA RERTRERMKN QGTDTSSDRS SQANPNSLEK FESSSPLEYG  300
ENLASVNREM KSPVKVSEVK ESSNHGLLRD QMDYVSIAGN FYGITNSPRS FSMCDFSESV  360
EFLPGGTNCK DEFPGFPVNW DMTNDRIRYK YNALTNMKLP PLNAHEESPN SFFMNMPNPD  420
DQNSISILMT TATNANQSSS NSFFVEDHYD CLYRSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256268RARARERTRERMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0079s0550.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494810.0AC149481.1 Populus trichocarpa clone Pop1-16J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312378.20.0transcription factor TCP12
TrEMBLQ9FUE70.0Q9FUE7_POPDE; Teosinte-branched-like protein
STRINGPOPTR_0008s11470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.16e-31TCP domain protein 12