PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0078s0410.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 243aa    MW: 27030.7 Da    PI: 7.0745
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0078s0410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.41.1e-284105197
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C +C+vlr++C+++C+++p++      ++q++++ +++k++G++ +++l++a p+  r+++++sl+yeA+ r+ +PvyG+vg++++
  SapurV1A.0078s0410.1.p   4 SCHGCRVLRKGCNDNCTIRPCLqwiksTDSQANATLFLAKFYGRAGLINLIEAGPQRLRPAIFRSLLYEACGRIVNPVYGSVGMLWS 90 
                             6*********************9998777889******************************************************* PP

                  DUF260  83 lqqqleqlkaelall 97 
                             +++  +q++++++l 
  SapurV1A.0078s0410.1.p  91 GNWAECQAAVDAVLK 105
                             ********9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7933109IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MRMSCHGCRV LRKGCNDNCT IRPCLQWIKS TDSQANATLF LAKFYGRAGL INLIEAGPQR  60
LRPAIFRSLL YEACGRIVNP VYGSVGMLWS GNWAECQAAV DAVLKGLPIV STPSSSDVPA  120
PHLISSLNTH DIRHVSRHQN SPELRKVKSR TRFKRSMPNS LAEPTVRLNP EELGFEPVRE  180
PWPGHLGNGD SYIKDEDSIL ATDETVEDSL WSRVEPEQVF KFNRQSDDSD LSLELTLALV  240
SE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0078s0410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314861.31e-149LOB domain-containing protein 41
RefseqXP_011007889.11e-150PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA307e-75LBD42_ARATH; LOB domain-containing protein 42
TrEMBLB9HWH61e-150B9HWH6_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13480.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.16e-77LOB domain-containing protein 42