PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0068s0650.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 25056.7 Da    PI: 8.7045
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0068s0650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.13e-301059251
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            rien s rqvtfskRrng+lKKA ELSvLCdaevaviifs++gklye++s
  SapurV1A.0068s0650.1.p 10 RIENASSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSQNGKLYEFAS 59
                            8***********************************************86 PP

2K-box70.55.3e-24851731199
                   K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                             e   e+l+ e++++ ++ie ++ +qR+llG+dL+++s +eLq++ +qLe sl++iR++K+ l++eqie+lq ke+ l een +Lrk+
  SapurV1A.0068s0650.1.p  85 ELYKEQLRYESENMARKIEIIKMSQRKLLGKDLDPCSSEELQEISRQLEISLNNIRARKDWLFKEQIEQLQAKERLLLEENARLRKQ 171
                             556788999*****************************************************************************9 PP

                   K-box  98 le 99 
                              +
  SapurV1A.0068s0650.1.p 172 CD 173
                             76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.226161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.51E-40371No hitNo description
SuperFamilySSF554551.83E-31376IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2288172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.33688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVRGKIQMRR IENASSRQVT FSKRRNGLLK KARELSVLCD AEVAVIIFSQ NGKLYEFAST  60
DNMQNTIERY RIDAKQGYTD RIDEELYKEQ LRYESENMAR KIEIIKMSQR KLLGKDLDPC  120
SSEELQEISR QLEISLNNIR ARKDWLFKEQ IEQLQAKERL LLEENARLRK QCDAQPWLQI  180
STQPNQAVAY LSSCSKSSDV ETELFIGVPQ MRCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-18161161MEF2 CHIMERA
6byy_B2e-18161161MEF2 CHIMERA
6byy_C2e-18161161MEF2 CHIMERA
6byy_D2e-18161161MEF2 CHIMERA
6bz1_A2e-18161161MEF2 CHIMERA
6bz1_B2e-18161161MEF2 CHIMERA
6bz1_C2e-18161161MEF2 CHIMERA
6bz1_D2e-18161161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0068s0650.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318261.11e-109MADS-box protein AGL42
RefseqXP_024437836.11e-109MADS-box protein AGL42
SwissprotQ9FIS15e-71AGL42_ARATH; MADS-box protein AGL42
TrEMBLB9I4G51e-108B9I4G5_POPTR; Uncharacterized protein
STRINGXP_002510866.13e-83(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-66AGAMOUS-like 42