PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0068s0590.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 121aa    MW: 13331.4 Da    PI: 8.7632
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0068s0590.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.9e-4051051100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqq 86 
                             +CaaCk+lrr+C++dC+++pyfp+++p++fa+vh+++Ga nv k+l++lp  + r +a++sl+yeA++r+rdPvyG+vg+i++l+qq
  SapurV1A.0068s0590.1.p   5 RCAACKYLRRRCPSDCIFSPYFPSNNPQRFACVHRIHGACNVAKMLQQLPAAHlRAEAANSLYYEAQCRTRDPVYGCVGIISSLHQQ 91 
                             6************************************************98888********************************* PP

                  DUF260  87 leqlkaelallkee 100
                             +++++++la++k+e
  SapurV1A.0068s0590.1.p  92 IHSVESQLAKTKAE 105
                             **********9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.3584106IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-395103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MISGRCAACK YLRRRCPSDC IFSPYFPSNN PQRFACVHRI HGACNVAKML QQLPAAHLRA  60
EAANSLYYEA QCRTRDPVYG CVGIISSLHQ QIHSVESQLA KTKAEIAVLD SLAQQPAQIQ  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-35610612111LOB family transfactor Ramosa2.1
5ly0_B3e-35610612111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0068s0590.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318256.21e-75LOB domain-containing protein 24
SwissprotP594684e-50LBD24_ARATH; LOB domain-containing protein 24
TrEMBLB9I4F93e-74B9I4F9_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13910.15e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36973066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-52LOB domain-containing protein 24