PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0068s0430.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 363aa    MW: 38019.1 Da    PI: 6.2335
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0068s0430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.58.2e-37831914110
                     TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 
                              k+ ++++hTkv+gR+RRvR++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++  +++ +  +++s +++
  SapurV1A.0068s0430.1.p  83 PKRNTKDRHTKVEGRGRRVRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAVsVNGTLKIPTESSAAAA 169
                             6899**********************************************************9998855532222222222222222 PP

                     TCP  90 aaksaa.kskksqksaasalnl 110
                             a ++a   ++k++++  +++++
  SapurV1A.0068s0430.1.p 170 ADSDADgLEHKKKRKRPCNSDF 191
                             2222222333333333334444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.2E-3186183IPR005333Transcription factor, TCP
PROSITE profilePS5136927.18787141IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDSQKHDHHT IEEIDQEQSI TVASLSDQTD PAALQLKEET LTDPEESREF EEHDSNIRRI  60
NSGGSNSCLV AHQVQRQQVA MAPKRNTKDR HTKVEGRGRR VRMPATCAAR IFQLTRELGH  120
KSDGETIRWL LEHAEPAIIA ATGTGTVPAI AVSVNGTLKI PTESSAAAAA DSDADGLEHK  180
KKRKRPCNSD FVDITEAARQ NSVSSGLAPI ATTSPQGLVP LWPMGTFMFP QGSSVGVGGT  240
NQAQFWAFPA TSTAPFLNMA ARPISSFVSA MQPGVQLAGN VSVGFGGESL GSGGSPPNTI  300
GSASSSSSGS SAAGASIGGG GGGGGGTQLL RDFSLEIYDK KELQFLGHPV NHDHQQAPCS  360
ES*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0068s0430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442051.10.0transcription factor TCP19
SwissprotQ9LT892e-83TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A3N7G1I00.0A0A3N7G1I0_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-75TCP family protein