PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0059s0640.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 288aa    MW: 31307.2 Da    PI: 7.6031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0059s0640.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20128178255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka++ a+ +l+g
  SapurV1A.0059s0640.1.p 128 HYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDSAAFRLRG 178
                             7********.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-32127187IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22128187IPR016177DNA-binding domain
CDDcd000182.37E-31128186No hitNo description
PROSITE profilePS5103224.645128186IPR001471AP2/ERF domain
PfamPF008471.7E-14128178IPR001471AP2/ERF domain
SMARTSM003803.3E-37128192IPR001471AP2/ERF domain
PRINTSPR003672.2E-13129140IPR001471AP2/ERF domain
PRINTSPR003672.2E-13168188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MESFDEASAL ELIREHLLTD FASMDSIITN LDDLCSTSSS SSAGSIKTES TELGPFDQSV  60
QPQPMLQSQS SIESKPQTSP KSPSTLSQRK PSMIKNIAIP PPATLNMAPQ VAQPVVTRAD  120
ASSEQERHYR GVRRRPWGKY AAEIRDPNKK GARVWLGTFD TAIEAAKAYD SAAFRLRGSK  180
AILNFPLEAG KSNSQQPEQF MGTPGKKRKI EEIESSTEST SSMITTKVVK RESSSPETEV  240
KAAATEPLTP SSWKGFWDGE VTGIFNVPPL SPLSPHPSFG YSRLMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-29127187161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0059s0640.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165940.0AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385825.11e-177ethylene-responsive transcription factor ERF105
TrEMBLB9NBQ91e-175B9NBQ9_POPTR; ERF family protein
STRINGPOPTR_0003s15040.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.15e-52ERF family protein