PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0059s0630.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 250aa    MW: 27676.2 Da    PI: 8.1184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0059s0630.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-20121171255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g
  SapurV1A.0059s0630.1.p 121 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAASAYDRAAYRMRG 171
                             7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-32120180IPR001471AP2/ERF domain
PfamPF008476.2E-14121171IPR001471AP2/ERF domain
CDDcd000182.45E-30121180No hitNo description
PROSITE profilePS5103224.408121179IPR001471AP2/ERF domain
SMARTSM003806.0E-38121185IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-23121181IPR016177DNA-binding domain
PRINTSPR003676.8E-11122133IPR001471AP2/ERF domain
PRINTSPR003676.8E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDGVTSLCEF STLSHHPHRR HRNPSFNSLI SCLTETWGDL PLKMDDSEDM VVYNFLRDAV  60
RFGWSPLDLT SPSTTTATAT NVVKAEPKYE LEQEAEPVEV VQEAGLNGAA FSKRVVAKGR  120
HYRGVRQRPW GKFAAEIRDP AKNGARVWLG TYETAEEAAS AYDRAAYRMR GSKALLNFPH  180
KIGSNEPEPV RITTKRREPE TCLLAVDSGP AKTRRTVVAH GDEMGRGRGS DVFQIGHHMM  240
PAGEQLLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-37117186170ATERF1
3gcc_A2e-37117186170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0059s0630.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165940.0AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022365.11e-139PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ9LW502e-90ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A2K2B7F01e-126A0A2K2B7F0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s15030.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-48ethylene responsive element binding factor 1