PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0058s0570.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 460aa    MW: 50634.7 Da    PI: 7.0647
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0058s0570.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18279328255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++GVr+++ +g+WvAeIr p++   r+r++lg+f taeeAa a++ a+  l+g
  SapurV1A.0058s0570.1.p 279 VFRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFNTAEEAAFAYDTAAFMLRG 328
                             69******9.**********955...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.405279336IPR001471AP2/ERF domain
PfamPF008473.6E-12279328IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-22279337IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-31279337IPR001471AP2/ERF domain
SMARTSM003803.7E-35279342IPR001471AP2/ERF domain
PRINTSPR003673.5E-10280291IPR001471AP2/ERF domain
CDDcd000185.00E-31280338No hitNo description
PRINTSPR003673.5E-10302318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEDQFPRLET FMRKELAAYS SFHGTATGSR YFGDPSIWGA LSGATCNGTT SPSQSSPERL  60
FSSSESSSSA NDVVSGTNLA GNIPGFGEQD VSKQNHESCF MSGLYSMNSP GGTISDHIAG  120
ESSINPVNFL ELFPALHNQA QVPEPPSPYS SSNTSKFPDL TLFLQEPEAF IQTSCQTTWQ  180
GSNPKQDVHQ LGKDQRCEPM PLFPNTSFSV PQLGQVHCQP SNEWLKINQA LANYSTKGFN  240
DYWLRTTPTQ PMKYTSRRIL QSHHQKPSFL SASTSPGKVF RGVRQRHWGK WVAEIRLPRN  300
RTRVWLGTFN TAEEAAFAYD TAAFMLRGDH AHLNFPDLKL QLKANSLNGA TAALLEAKLR  360
AISQGNTISG QKKHSNDPPP PPPPPPDKIL HDMNATKPKN TTRKELKFDL EGKAGCHELI  420
HESQKGQEVV ASDVEAVLLS RMPSLDMDMI WDALLVSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20275346168ATERF1
3gcc_A4e-20275346168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0058s0570.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559450.0EF155945.1 Populus trichocarpa RAP2.4-like protein (RAP2L4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298696.30.0ethylene-responsive transcription factor ERF062
TrEMBLA0A2K2C6P90.0A0A2K2C6P9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s32250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.15e-59ERF family protein