PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0057s0300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 211aa    MW: 23245.2 Da    PI: 4.5412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0057s0300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.4e-182373155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ++ykGVr +k +grWv+eIr p++   r r++ g+++t+e+Aa+a +aa  +l+g
  SapurV1A.0057s0300.1.p 23 PKYKGVRKRK-WGRWVSEIRLPNS---RERIWFGSYDTPEKAARAFDAALYCLRG 73
                            79*****999.**********933...5*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.10E-272383No hitNo description
PfamPF008472.0E-112373IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-202483IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-282482IPR001471AP2/ERF domain
SMARTSM003803.4E-292487IPR001471AP2/ERF domain
PROSITE profilePS5103221.7332481IPR001471AP2/ERF domain
PRINTSPR003671.2E-82536IPR001471AP2/ERF domain
PRINTSPR003671.2E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVRPGTSSSS VSSEQQADRT HEPKYKGVRK RKWGRWVSEI RLPNSRERIW FGSYDTPEKA  60
ARAFDAALYC LRGIGAKLNF PDNPPDIIVG GRSLSHQEVQ EVAARFANEE PAPSSAAMVG  120
ESSSHVENYT SSSSECGAGQ MDSDTIDWSF LNMLDSNEGA SDFGLYHGLD HMGGDYYTPP  180
APPPPPPSDY NEDDNNGDET YSHQSFLWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1524811472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0057s0300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019312.11e-122PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ84QC24e-55ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA9PLA31e-119A9PLA3_POPTR; RAP2-like protein
STRINGPOPTR_0006s23480.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]