PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0048s0750.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 471aa    MW: 51806.9 Da    PI: 6.4118
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0048s0750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19232282256
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  SapurV1A.0048s0750.1.p 232 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 282
                             59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.70E-34231291No hitNo description
PROSITE profilePS5103222.932232289IPR001471AP2/ERF domain
SMARTSM003801.4E-39232295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-32232290IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22232290IPR016177DNA-binding domain
PRINTSPR003671.0E-10233244IPR001471AP2/ERF domain
PfamPF008472.6E-12233282IPR001471AP2/ERF domain
PRINTSPR003671.0E-10255271IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAAVKSSIGK SKKGFADETR KMTMEEDWQL GRREKEADVS FEKRQWKPVV GEDSLSNRPM  60
KKTCSPVRQE QMQSSASLAH QPPSCFSVSS TSASTLSPYP PSSSPSPISS SGSSSSRIVF  120
PFAFEGSNQT IQYPQQFRTP PSLPVFHPLS QAAQNQQQMI SFGQNQQPHG IAYPPFFTGG  180
LAMADHQQQL FQYWSDVLNL SPRGRMMMMN KLGPDGRPLF RPPIQPINSR KLYRGVRQRH  240
WGKWVAEIRL PRNRTRLWLG TFDTAEDAAL AYDREAFKLR GENARLNFPE LFLGKDKATS  300
TAQNSTVSSP PTPNQSSKPK PAQEGLNLLA ETMSPPILPP PPPPEQPPGD HPDDDCEMGS  360
SGATVSGEIQ AVAEGSSAGE GILGSQELMW GDMAEAWYDA IQSGWGPGSP VWDDLDSTNN  420
LLLQSHLPFV NPNQQQFNDS CVLQDNMGSS SSSSSSSFFP MKSFFLKDQD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21231289160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0048s0750.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559420.0EF155942.1 Populus trichocarpa RAP2-like protein (RAP2L1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319909.20.0uncharacterized protein LOC7494418
TrEMBLA9PL910.0A9PL91_POPTR; RAP2-like protein
TrEMBLB9I5K40.0B9I5K4_POPTR; Uncharacterized protein
STRINGPOPTR_0013s13920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-60ERF family protein