PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0045s0730.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 179aa    MW: 19019.2 Da    PI: 4.7786
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0045s0730.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.35.9e-161262156
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            + y+G+r  +++g+Wv+eIr+p++   ++r++lg+f  +e+Aa+a++ a ++l+g+
  SapurV1A.0045s0730.1.p 12 PVYRGIR--SRSGKWVSEIREPRK---TTRIWLGTFPEPEMAAAAYDVAVLALRGA 62
                            68****6..678*********843...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-81261IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-181371IPR016177DNA-binding domain
SMARTSM003803.5E-261375IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-271370IPR001471AP2/ERF domain
PROSITE profilePS5103219.7441369IPR001471AP2/ERF domain
PRINTSPR003671.7E-61425IPR001471AP2/ERF domain
CDDcd000181.01E-261471No hitNo description
PRINTSPR003671.7E-65171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MATTSSSSKR HPVYRGIRSR SGKWVSEIRE PRKTTRIWLG TFPEPEMAAA AYDVAVLALR  60
GADAALNFPS SVGTYPFPAS TSPTDIRNAA NAAAALKKAE LSNNAALAEQ PRNDYANIGT  120
FLASSGEEFV DEEALFDMPN LLVDMAGGML LSPPRITSSP SDNSQGITSD GESLWSYS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0045s0730.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453070.11e-102ethylene-responsive transcription factor ERF027
SwissprotQ9FJ906e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLB9GW611e-101B9GW61_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12120.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-41ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]