PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0042s0120.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 166aa    MW: 18387 Da    PI: 6.8947
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0042s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.28.2e-4561051100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+
  SapurV1A.0042s0120.1.p   6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQEIPVHQRVDAVSSLVYEANARVRDPVYGCVGAISYLQNQV 92 
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             +ql+ +la++++e
  SapurV1A.0042s0120.1.p  93 SQLQMQLAATQAE 105
                             ********99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.9185106IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-446103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGGSSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQEIPVHQRV  60
DAVSSLVYEA NARVRDPVYG CVGAISYLQN QVSQLQMQLA ATQAEMICIQ MQQEPTLPTQ  120
LDQDDEKALL LASSNNFINN IPQHFNFAST SNVIQDPLKR ESLWT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003387.11e-112PREDICTED: LOB domain-containing protein 12-like
RefseqXP_002313968.21e-112hypothetical protein POPTR_0009s08060g
SwissprotQ8LBW36e-82LBD12_ARATH; LOB domain-containing protein 12
TrEMBLB9HN991e-112B9HN99_POPTR; Uncharacterized protein
STRINGPOPTR_0001s28840.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.13e-83LBD family protein