PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0033s0440.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 370aa    MW: 41657.3 Da    PI: 6.4555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0033s0440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038426123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            +kC+ C ksFs+   L  H+r+H
  SapurV1A.0033s0440.1.p  4 HKCKLCFKSFSNGRALGGHMRSH 26
                            79********************9 PP

2zf-C2H213.20.00026229251123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ykC+ C+++F++   L  H  +H
  SapurV1A.0033s0440.1.p 229 YKCETCNRVFKSYQALGGHRASH 251
                             9************9999998887 PP

3zf-C2H212.70.00039283305123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++Cp+C ++Fs+   L  H r+H
  SapurV1A.0033s0440.1.p 283 HECPYCFRVFSSGQALGGHKRSH 305
                             79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.6E-8326No hitNo description
PfamPF139125.6E-6426IPR007087Zinc finger, C2H2
SMARTSM003550.038426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.6E-8224251No hitNo description
PROSITE profilePS5015710.305229256IPR007087Zinc finger, C2H2
PfamPF139125.5E-11229253IPR007087Zinc finger, C2H2
SMARTSM003550.017229251IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SuperFamilySSF576677.83E-5280306No hitNo description
PROSITE profilePS501579.286283305IPR007087Zinc finger, C2H2
PfamPF139123.1E-11283306IPR007087Zinc finger, C2H2
SMARTSM003550.17283305IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280285305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEKHKCKLCF KSFSNGRALG GHMRSHLLIL PIPPKLEDRF PNIEVSEDTE STSSSEEEAE  60
EGHEEEEEEK AVFYGPRENP KRSTRLVDPE FSLAAADAGS VVLQDRESES ESSKNPTRRR  120
SKRTKRLLEQ HRQYHQQRPR QEQENNIIIE KLEFKKMRTV KTAAESSWGH EPEPVSSVSG  180
TTTEEDVAFC LVMLSRDRWK RKEGEELAGA ETDDSDEFKS CKTKTKGKYK CETCNRVFKS  240
YQALGGHRAS HKKLKVYTPS NKPKLEPTEN AGASTSLPEK KIHECPYCFR VFSSGQALGG  300
HKRSHLIGVA ASASTPARTS TKIGDHNWGL IDLNLPAPVD DDDDDDDDIS QVDQLYAVSD  360
AEFVNYVKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0033s0440.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450701.10.0zinc finger protein ZAT9
TrEMBLA0A3N7EQJ90.0A0A3N7EQJ9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-36C2H2-like zinc finger protein