PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0025s0940.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 220aa    MW: 24067.8 Da    PI: 6.5127
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0025s0940.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.11e-132568955
                     AP2  9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            + ++g+WvAeIr   +   + +r +lg+f+t  eAa a++aa++kl+g
  SapurV1A.0025s0940.1.p 25 KGTWGKWVAEIRGS-N---HgARLWLGTFDTSHEAAMAYDAAARKLYG 68
                            567*******9983.2...35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.5711876IPR001471AP2/ERF domain
PRINTSPR003671.0E-42031IPR001471AP2/ERF domain
CDDcd000182.84E-162478No hitNo description
PfamPF008472.1E-102468IPR001471AP2/ERF domain
SMARTSM003801.2E-262482IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-242477IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-172577IPR016177DNA-binding domain
PRINTSPR003671.0E-44258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSRSILSGSG EKKQPKKPAR ASSRKGTWGK WVAEIRGSNH GARLWLGTFD TSHEAAMAYD  60
AAARKLYGPE AKLNFPELQV DNSQFPASPA NSQVIQMTHQ SSHLIHNSGP TSTCSSNIPS  120
MESNEAKPIL YSHDPIMSFS NGSVYSNGME AENDSRFGRS RDKIKEFLSN VNVNMTFDDS  180
IWAEAALSIN FPVMDDPGIF ASNLMEGSGW DTLQTPWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1324761972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0025s0940.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302006.21e-119dehydration-responsive element-binding protein 2D
TrEMBLB9GRH71e-118B9GRH7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03090.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-28ERF family protein