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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0025s0940.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 24067.8 Da PI: 6.5127 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.1 | 1e-13 | 25 | 68 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++g+WvAeIr + + +r +lg+f+t eAa a++aa++kl+g SapurV1A.0025s0940.1.p 25 KGTWGKWVAEIRGS-N---HgARLWLGTFDTSHEAAMAYDAAARKLYG 68 567*******9983.2...35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.571 | 18 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-4 | 20 | 31 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.84E-16 | 24 | 78 | No hit | No description |
Pfam | PF00847 | 2.1E-10 | 24 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-26 | 24 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-24 | 24 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-17 | 25 | 77 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.0E-4 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSRSILSGSG EKKQPKKPAR ASSRKGTWGK WVAEIRGSNH GARLWLGTFD TSHEAAMAYD 60 AAARKLYGPE AKLNFPELQV DNSQFPASPA NSQVIQMTHQ SSHLIHNSGP TSTCSSNIPS 120 MESNEAKPIL YSHDPIMSFS NGSVYSNGME AENDSRFGRS RDKIKEFLSN VNVNMTFDDS 180 IWAEAALSIN FPVMDDPGIF ASNLMEGSGW DTLQTPWCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-13 | 24 | 76 | 19 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0025s0940.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302006.2 | 1e-119 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | B9GRH7 | 1e-118 | B9GRH7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s03090.1 | 1e-119 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0025s0940.1.p |