PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0024s0780.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 241aa    MW: 24585.9 Da    PI: 8.2798
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0024s0780.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.9e-39321321100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                             +C aCk+lrrkC+++C++apyf +eq ++ fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq
  SapurV1A.0024s0780.1.p  32 PCGACKFLRRKCVPGCIFAPYFDSEQgAAYFAAVHKVFGASNVSKLLLNIPVNKRLDAVVTICYEAKARLRDPVYGCVAHIFALQQQ 118
                             7***********************998899********************************************************* PP

                  DUF260  87 leqlkaelallkee 100
                             + +l+ael+ ++++
  SapurV1A.0024s0780.1.p 119 VVNLQAELSFMQAH 132
                             ********999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.89531133IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3932130IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSTATTNPVN SGGGGGGSGG GGGGSGGGGG GPCGACKFLR RKCVPGCIFA PYFDSEQGAA  60
YFAAVHKVFG ASNVSKLLLN IPVNKRLDAV VTICYEAKAR LRDPVYGCVA HIFALQQQVV  120
NLQAELSFMQ AHLAAMEVTP PPPPTLVTQP PLSIAAGLPS ASSIPAGYDL SSLYDPMVQP  180
SWSMQPRQQD PRQFGGNSGT SETSGGDLQA LVRELLHRRG SPPPGSVPCS DALASSSISK  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11024SGGGGGGSGGGGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301295.21e-127hypothetical protein POPTR_0002s15000g
SwissprotO221319e-78LBD18_ARATH; LOB domain-containing protein 18
TrEMBLB9GPH41e-127B9GPH4_POPTR; Uncharacterized protein
STRINGVIT_15s0048g00830.t015e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.14e-76LOB domain-containing protein 18