PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0019s0350.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GeBP
Protein Properties Length: 271aa    MW: 29976.2 Da    PI: 10.7612
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0019s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57340.57.6e-131191841797
                  DUF573  17 qGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                             qG+idf a++g +ps+   ++af++f+k+s++f+v+ +ql +Ki rL+k                 +k+hdqk f+lsk iWg
  SapurV1A.0019s0350.1.p 119 QGIIDFIAEKGYDPSKvmAMNAFFDFIKNSLHFDVTMTQLKDKISRLRK-----------------NKPHDQKGFDLSKYIWG 184
                             9***********7777669****************************86.................25888888888888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.1E-8119167IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAPKRAPAVE DPLSASSRRR RNFQCPPKPE PTIRQSLSES GSESESEPGQ SVKPITSKPK  60
EETPPKEAAA SVAKKSRSKP ALAATPEKST AVKRGNGADR DPKDLKRAKN KNGHDLRWQG  120
IIDFIAEKGY DPSKVMAMNA FFDFIKNSLH FDVTMTQLKD KISRLRKNKP HDQKGFDLSK  180
YIWGSEGSIK ANGKKNTNFN GSKTGNVKKL EALKTGMDVE MERDSSVKKV LKFDRNASVG  240
TMDDYVVRSG LDLAHGMKRK RWRRSGGSCI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0019s0350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1451182e-62EF145118.1 Populus trichocarpa clone WS01120_J07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313912.11e-101GLABROUS1 enhancer-binding protein-like
TrEMBLB9HMZ51e-100B9HMZ5_POPTR; GeBP family protein
STRINGPOPTR_0009s09150.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-16DNA-binding storekeeper protein-related transcriptional regulator