PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0019s0260.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 189aa    MW: 20717.6 Da    PI: 8.3366
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0019s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.49e-282102196
                  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                             +C++C+vlr++C+++C+l+ ++     p++q++++ +v+k+FG+  ++++++++p+++ + +++sl++eA  r+ +Pv+Gavg++++
  SapurV1A.0019s0260.1.p   2 SCNGCRVLRKGCSEECALRHCIewidnPQAQANATVFVAKFFGRGGLMSFISSVPKSQGPSLFRSLLFEAVGRTVNPVSGAVGLLWT 88 
                             6************************************************************************************** PP

                  DUF260  83 lqqqleqlkaelal 96 
                             ++++++q+++ ++l
  SapurV1A.0019s0260.1.p  89 GNWHVCQKAVMTVL 102
                             *******9987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6621107IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-23298IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEECALR HCIEWIDNPQ AQANATVFVA KFFGRGGLMS FISSVPKSQG  60
PSLFRSLLFE AVGRTVNPVS GAVGLLWTGN WHVCQKAVMT VLRRGTVEPR PEFDNASECG  120
SFRPPVDHVS SRPQPLKRKR ADLDLCFTYQ RADTPPEESE TTTLESGSGN NCRFHDGGGE  180
PKLLRLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0019s0260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313905.11e-112LOB domain-containing protein 39 isoform X1
SwissprotQ9SN239e-60LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9HMY41e-110B9HMY4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09270.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.17e-62LOB domain-containing protein 38