PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0013s1130.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 359aa    MW: 39785.4 Da    PI: 7.6844
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0013s1130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.8e-1387131147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  SapurV1A.0013s1130.1.p  87 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 131
                             789*****************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1681137IPR009057Homeodomain-like
PROSITE profilePS5129415.40882136IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-685137IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1885134IPR006447Myb domain, plants
SMARTSM007175.3E-1186134IPR001005SANT/Myb domain
PfamPF002493.1E-1187131IPR001005SANT/Myb domain
CDDcd001672.43E-889132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVSVNPNPDQ GFYFFDPMNN SSHMELPGVN FLPPNNTSTN TATDTCNNTV SAANSTTNNN  60
NNNHTLVSFS EDPNKKIRKP YTITKSRESW TEQEHDKFLE ALQLFDRDWK KIEAFVGSKT  120
VIQIRSHAQK YFLKVQKSGT SEHVPPPRPK RKAAHPYPQK APKSAAVASQ VTGSFQSSSA  180
LLEPGYLYGH DSTSVLGNPI TSGALSTWNF NSVPPVNMSQ MTNDDAGLAE PAIANKCCYS  240
SSNESASRPW QTGKIIDRRA QGQPERVMPD FAQVYSFIGS VFDPKASDHL QRLKQMDPIN  300
LETVLLLMRN LSINLTSPEF DDHRRLLASY EVDSEKVNEG GRYSNTTVDR LGNLIPAI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0013s1130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320823.10.0protein REVEILLE 5
SwissprotC0SVG51e-112RVE5_ARATH; Protein REVEILLE 5
TrEMBLB9I8P30.0B9I8P3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s08520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.21e-99MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]