PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0013s0740.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 319aa    MW: 36733.9 Da    PI: 6.2546
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0013s0740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.2e-21117167155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             ++y+GVr+++ +grW+AeIrdp+    r +r++lg+++taeeAa  +++a+ +++g
  SapurV1A.0013s0740.1.p 117 KKYRGVRQRP-WGRWAAEIRDPY----RrTRVWLGTYDTAEEAAMVYDEAAIRIKG 167
                             59********.**********75....34***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.89E-32117174No hitNo description
Gene3DG3DSA:3.30.730.107.1E-31118176IPR001471AP2/ERF domain
SMARTSM003801.6E-38118181IPR001471AP2/ERF domain
PfamPF008473.6E-14118167IPR001471AP2/ERF domain
PROSITE profilePS5103223.723118175IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21118175IPR016177DNA-binding domain
PRINTSPR003675.7E-11119130IPR001471AP2/ERF domain
PRINTSPR003675.7E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MFSTKNQTHK RLDHIKRMDP FSTKYTEHKT VTNKLVRWED SKATRIVRIS VTDGNATDSS  60
GDENEEPKIQ HPRIKKHINE IRMKNCSDRA ARDAAKSSRQ QVVKKNSRDQ YYYPEGKKYR  120
GVRQRPWGRW AAEIRDPYRR TRVWLGTYDT AEEAAMVYDE AAIRIKGPDA QTNFTKTPVS  180
KQHTPDVDII ANISGYDSGK ESHNSLCSPT SVLRFQSTEE PGPESQATAD ASVQSDSFWR  240
QKKEVVQEEK LKGDDDECLA MDPLCLKEYW DFESHAPIFF EECSVPDTVL REDYADMPVH  300
LDCDFGSCLW DVDKYFEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20115174262ATERF1
3gcc_A3e-20115174262ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0013s0740.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320179.20.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLB9I8U10.0B9I8U1_POPTR; ERF family protein
STRINGPOPTR_0014s09020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.17e-49cytokinin response factor 5