PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 278aa    MW: 30917.5 Da    PI: 5.1211
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18119169255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrd      k +r +lg+f taeeAa a+++a+++++g
  SapurV1A.0012s0900.1.p 119 HYRGVRRRP-WGKYAAEIRDS---SrKGARAWLGTFETAEEAALAYDKAALRIRG 169
                             7********.**********3...2234*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-30118178IPR001471AP2/ERF domain
CDDcd000182.97E-28119177No hitNo description
SuperFamilySSF541711.57E-22119179IPR016177DNA-binding domain
SMARTSM003804.2E-35119183IPR001471AP2/ERF domain
PROSITE profilePS5103223.578119177IPR001471AP2/ERF domain
PfamPF008472.4E-13119169IPR001471AP2/ERF domain
PRINTSPR003671.4E-10120131IPR001471AP2/ERF domain
PRINTSPR003671.4E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSIQSDHRSA SEGILENVWA SYMGEDGGDK GISNGEQEVS KSWRELPSLD RRDDSLEVLR  60
RLPSLGRWIS MGAETWEELL DGIIPEINNT CNDSAENKAP SSLCSTASTM KAEKVTTRHY  120
RGVRRRPWGK YAAEIRDSSR KGARAWLGTF ETAEEAALAY DKAALRIRGP KTFLNFPLET  180
VAKAMCVDCS KNDHSNVFST TISQGNDTSC TFLGSSDKAS DIHRKRASRD WEVKSESTMM  240
EQPGLKRMAL EQPGLDVVEF QDLGSDYLDS LLSSYLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27118178161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0012s0900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305098.21e-171ethylene-responsive transcription factor ERF091
TrEMBLB9H2N01e-171B9H2N0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s05110.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.17e-36ERF family protein