PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0890.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 181aa    MW: 19592.7 Da    PI: 9.1827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0890.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1959109255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrd +    r +r++lg+f taeeAa a+++a+ +++g
  SapurV1A.0012s0890.1.p  59 HYRGVRRRP-WGKYAAEIRDSRR---RgARIWLGTFETAEEAALAYDRAAFNMRG 109
                             8********.**********433...34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-3158118No hitNo description
Gene3DG3DSA:3.30.730.101.2E-3158118IPR001471AP2/ERF domain
PROSITE profilePS5103223.60459117IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2359119IPR016177DNA-binding domain
PfamPF008475.0E-1559109IPR001471AP2/ERF domain
SMARTSM003803.7E-3659123IPR001471AP2/ERF domain
PRINTSPR003671.9E-116071IPR001471AP2/ERF domain
PRINTSPR003671.9E-118399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVLTSQSHDL PLNENDSQDM VIYQMINDIS APNSSTCSTL PRSHVSTSSM LRPAIAKKHY  60
RGVRRRPWGK YAAEIRDSRR RGARIWLGTF ETAEEAALAY DRAAFNMRGS KALLNFPAEV  120
VAAPPSAPNF QPVSSSTRSS ENASESSCGS RTISIPTSQS ESESSQSGGP RQKGSDIVEN  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3258120466ATERF1
3gcc_A2e-3258120466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0012s0890.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454922.11e-104pathogenesis-related genes transcriptional activator PTI5
SwissprotO046815e-51PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A2K2AQ621e-102A0A2K2AQ62_POPTR; Uncharacterized protein
STRINGPOPTR_0004s05100.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-30ethylene responsive element binding factor 1