PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0880.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WOX
Protein Properties Length: 392aa    MW: 43120 Da    PI: 7.8548
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0880.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.73.5e-1757117257
                             T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                             ++R+++++eq+++Le+ F++   +p ++e++++  +l    ++ +++V++WFqNr+ + k+
  SapurV1A.0012s0880.1.p  57 KPRWNPKPEQIRILEAIFNSgLVNPPRDEIRKIRVQLqeygQVGDANVFYWFQNRKSRSKH 117
                             89*****************99*************************************995 PP

2Wus_type_Homeobox109.32.2e-3556118264
       Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                             +++RW+P+peQi+iLe++++sGl++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R+++k
  SapurV1A.0012s0880.1.p  56 PKPRWNPKPEQIRILEAIFNSGLVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHK 118
                             689**********************************************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1251122IPR009057Homeodomain-like
PROSITE profilePS5007110.17153118IPR001356Homeobox domain
SMARTSM003897.4E-855122IPR001356Homeobox domain
CDDcd000864.01E-756119No hitNo description
Gene3DG3DSA:1.10.10.601.4E-756125IPR009057Homeodomain-like
PfamPF000461.2E-1457117IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MASSNRHWTS KFKSKPCNLH DHQWHHDINP SSIMSTGCHR TPCTSVPGCD ERSPEPKPRW  60
NPKPEQIRIL EAIFNSGLVN PPRDEIRKIR VQLQEYGQVG DANVFYWFQN RKSRSKHKMR  120
NLQNPEQHSS NQQQITPPTT KPVTTNLAAP SSSSSSSEKS SPRESKRTLS LSSPSFMDAS  180
NLSTSSVNKT YFRAHDESVP EPFFFQSQQT GGGGAGAFAQ GFCFSELSNV VHLQDHTVGR  240
CSNLLLSEIM NSSASKKVNH EEKNLTMQPQ LFYTPASPVT DSNGLAPPLT PPTHTSTVAS  300
QSTINQIQGA GASGCTARST VFINDVSFEV TVGPFNVREA FGDDALLIHS SGQPVLTNEC  360
GVTLQSLQHG AFYYLVPFTM SEHVSFIDFS F*
Functional Description ? help Back to Top
Source Description
UniProtHomeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0012s0880.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9827080.0KF982708.1 Populus tomentosa WOX9a (WOX9a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454266.10.0WUSCHEL-related homeobox 9
SwissprotQ6X7J49e-84WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBLW8P7700.0W8P770_POPTO; WOX9a
STRINGPOPTR_0004s05090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.13e-60homeobox-3
Publications ? help Back to Top
  1. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  4. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  5. Blein T,Pautot V,Laufs P
    Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection.
    Plants (Basel), 2013. 2(2): p. 230-47
    [PMID:27137374]