PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0006s0870.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 122aa    MW: 13681.3 Da    PI: 7.6719
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0006s0870.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-201768256
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                            +y+GVr+++ +g+++AeIrd +    + +r +lg+f taeeAa+a+++a+ +++g+
  SapurV1A.0006s0870.2.p 17 RYRGVRRRP-WGKFAAEIRDSTR---HgARLWLGTFNTAEEAARAYDRAAYSMRGP 68
                            59*******.**********422...25*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.8941775IPR001471AP2/ERF domain
PfamPF008472.8E-151767IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-231776IPR016177DNA-binding domain
SMARTSM003804.5E-341780IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-311776IPR001471AP2/ERF domain
CDDcd000182.09E-181775No hitNo description
PRINTSPR003671.4E-111829IPR001471AP2/ERF domain
PRINTSPR003671.4E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MDHPNVGKVS QKGGEIRYRG VRRRPWGKFA AEIRDSTRHG ARLWLGTFNT AEEAARAYDR  60
AAYSMRGPLA VLNFPGEYPK TKDAETSGIG RGKEVFEIEY LDDKLLEDLL DFEEGTSKKS  120
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3311051114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0006s0870.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024449947.13e-66ethylene-responsive transcription factor ERF095
SwissprotQ9LTC57e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2K2BD466e-59A0A2K2BD46_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04040.14e-57(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]