PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0004s0380.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 271aa    MW: 30340.3 Da    PI: 7.6578
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0004s0380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-19125179256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             rk+ ++tkeq  +Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  SapurV1A.0004s0380.1.p 125 RKKLRLTKEQSVVLEDNFKDHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARSK 179
                             78889************************************************98 PP

2HD-ZIP_I/II121.83.5e-39125213190
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rl+keq+ +LE++F+ +++L+p++K++la++L+l+prqv+vWFqnrRAR k+kq+E+d+e Lk+++++l++en+rL+ke +eL
  SapurV1A.0004s0380.1.p 125 RKKLRLTKEQSVVLEDNFKDHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARSKLKQTEVDCELLKKCCETLTSENKRLQKELQEL 211
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 ree 90 
                             + +
  SapurV1A.0004s0380.1.p 212 K-S 213
                             9.4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.119121181IPR001356Homeobox domain
SMARTSM003893.8E-17123185IPR001356Homeobox domain
SuperFamilySSF466893.29E-18123189IPR009057Homeodomain-like
CDDcd000864.59E-16124182No hitNo description
Gene3DG3DSA:1.10.10.606.3E-18125179IPR009057Homeodomain-like
PfamPF000461.4E-16125179IPR001356Homeobox domain
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
SMARTSM003404.5E-22181224IPR003106Leucine zipper, homeobox-associated
PfamPF021834.4E-9181214IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MIMGFGTTDD LCNTSLGLEL GSFHAEQENC SQSGRLFQPI KKNKLALKYD HMLPSLTLGP  60
SEEVYRSIRK KIDADLQPQA SSFSAVSSFS NSSIKKEREF GIGEEVDVER VSSRVSDEDE  120
EGSPRKKLRL TKEQSVVLED NFKDHSTLNP KQKQALAEQL NLRPRQVEVW FQNRRARSKL  180
KQTEVDCELL KKCCETLTSE NKRLQKELQE LKSLKLSSPV YMQLPAATLT MCPSCERICG  240
GSDQGSSTTT FTDGPKPNFY NPYTHSSAAC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0004s0380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302378.11e-172homeobox-leucine zipper protein HAT22
SwissprotP466047e-82HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLB9GNK21e-171B9GNK2_POPTR; HD-ZIP family protein
STRINGPOPTR_0002s11410.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-64HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]