PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0003s1030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 198aa    MW: 21833.2 Da    PI: 4.8231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0003s1030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-183787155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  SapurV1A.0003s1030.1.p 37 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 87
                            68*****887.**********843...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-123787IPR001471AP2/ERF domain
PROSITE profilePS5103223.4723895IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-213897IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-313896IPR001471AP2/ERF domain
SMARTSM003801.0E-3438101IPR001471AP2/ERF domain
CDDcd000181.00E-293996No hitNo description
PRINTSPR003673.1E-123950IPR001471AP2/ERF domain
PRINTSPR003673.1E-127797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEQLPYTEDD PTTNPEAATA LARKISDRTR GSGTRHPVYR GVRKRRWGKW VSEIREPRKK  60
SRIWLGSFPV PEMAAKAYDV AAYCLKGRTA QLNFPDEVDE LPRPSTCTAR DIQAAATKAA  120
HLVLIPLEKS NEKNNDGGSD DGEVAGDDFW GEIELPELLL SNSGYSWDCC GWNTTFASDN  180
STWQPDGEGL QPSTACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-193099676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0003s1030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485410.0EF148541.1 Populus trichocarpa x Populus deltoides clone WS0133_J24 unknown mRNA.
GenBankEF1559310.0EF155931.1 Populus trichocarpa TINY-like protein (TINYL12) gene, complete cds.
GenBankEF1559320.0EF155932.1 Populus trichocarpa TINY-like protein (TINYL13) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006387557.21e-110LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-60ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA9PJF31e-105A9PJF3_9ROSI; Uncharacterized protein
TrEMBLA9PL821e-105A9PL82_POPTR; TINY-like protein
STRINGPOPTR_0855s00200.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.15e-63ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]