PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0001s0300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 453aa    MW: 50947.7 Da    PI: 6.3633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0001s0300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-1771128255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr++  +g+WvAeIr+p++ +    k+  r +lg+f ta+eAa a++ a++ ++g
  SapurV1A.0001s0300.1.p  71 RYRGVRQRT-WGKWVAEIREPVKKCglmnKKgSRLWLGTFSTAFEAASAYDYAARLIYG 128
                             59****999.**********766333665446*********************987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-2771137No hitNo description
Gene3DG3DSA:3.30.730.107.9E-2971137IPR001471AP2/ERF domain
SMARTSM003801.2E-3371142IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1871137IPR016177DNA-binding domain
PfamPF008473.4E-1071124IPR001471AP2/ERF domain
PROSITE profilePS5103222.78771136IPR001471AP2/ERF domain
PRINTSPR003672.1E-97283IPR001471AP2/ERF domain
PRINTSPR003672.1E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEDSLRQSSS LGFSSKNRKR WKRSRNGCDS IEDTLAKWKK HNKLQISKVP GKGSKKGCMK  60
GKGGPENMNF RYRGVRQRTW GKWVAEIREP VKKCGLMNKK GSRLWLGTFS TAFEAASAYD  120
YAARLIYGPN AILNFPDCPV ESGVHLNNMS SSITATESSS TESRKALDSY EDNKVDKSKM  180
NHCGYREGNN PSGFSRICAV DESEEAVDRF RVAESSDREL KAVEWNLTDD WKSSHHIEAE  240
SPVLREEMDG ELAEIFRSWG CNGISNRYGL LQNETENVEY KKLKNEVVES SMSTRLDEFV  300
DSDNDMRTDH KPIYDVEKPL MREAAAGEEF SGLKFSNYNH SEAAHDYMNP GLCNQEIDIK  360
PFIQDISVLK GGMNYGYDPR KAGSPSHVQG GRPSTLSCHW QTPSTNLPWS SSYFQEADLG  420
RGWNVDLSQQ DFNGGLVGEP GMPDPWCPDL QF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1672136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0001s0300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559600.0EF155960.1 Populus trichocarpa putative DRE-binding protein 4 (DREB4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459148.10.0uncharacterized protein LOC7468071 isoform X1
TrEMBLA0A2K2A0170.0A0A2K2A017_POPTR; Uncharacterized protein
STRINGPOPTR_0006s10510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.12e-20ERF family protein