PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0061900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 301aa    MW: 32611.8 Da    PI: 7.9794
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0061900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.98.9e-304107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p+ q +++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P++Ga+g+++++++ql+q+
  Spipo8G0061900   4 SCNGCRVLRKGCSDNCSIRPCLqwiknPEWQGNATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRMVNPIHGAIGLLWTGSWQLCQA 98 
                     6************************99999***************************************************************** PP

          DUF260  91 kaelallke 99 
                     +++++l ++
  Spipo8G0061900  99 AVDAVLKGR 107
                     *99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.8133109IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKN PEWQGNATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRMVNP IHGAIGLLWT GSWQLCQAAV DAVLKGRPIA QIPVDSSAGA  120
PIPPLQKAFS SSIRHVSKED AAVKEINKVN KDSRTPFKRS VKRRLLSPKD FYILTRPQSS  180
TSGGSDRNST DDDDCRENEA MLSVETVEGS LVTCHETERG KVGREAAEDS DVELELTLGF  240
EPAHHSHSSS SSSSHSRGHS GTWSGIRPAG EELPKGHGPI RMDGVDRDGL GKDLGLDLPA  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157164KRSVKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394433.17e-93PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8862e-73LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A200Q3F62e-91A0A200Q3F6_9MAGN; Uncharacterized protein
STRINGXP_008799243.19e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-76LOB domain-containing protein 41