PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0036600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GATA
Protein Properties Length: 169aa    MW: 18367.2 Da    PI: 10.8898
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0036600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.21.5e-204982134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Spipo8G0036600 49 CSDCNTTKTPLWRSGPQGPKSLCNACGIRQRKAR 82
                    *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.6114379IPR000679Zinc finger, GATA-type
SMARTSM004015.8E-2043100IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-134382No hitNo description
Gene3DG3DSA:3.30.50.102.7E-164782IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.60E-124876No hitNo description
PfamPF003201.3E-174982IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404974IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MRIMRKMMNS AGINGTKPSK SSSEIRDHQQ WIPDNNSNRS VPAGAIRVCS DCNTTKTPLW  60
RSGPQGPKSL CNACGIRQRK ARRAMAAAGL IPAAGQTKVG KEKIVQSECT VPFKKRCKFT  120
SAQPRNKLHF DEFTMSISNS SAFHGVFPQD EKDAAVLLMG LSCGLIRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797761.12e-55PREDICTED: putative GATA transcription factor 22
SwissprotQ9SZI66e-28GAT22_ARATH; Putative GATA transcription factor 22
TrEMBLM0RLX54e-45M0RLX5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P27510_0011e-44(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.19e-18GATA family protein