PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0015400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GeBP
Protein Properties Length: 383aa    MW: 40156.4 Da    PI: 4.9982
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0015400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573114.75.6e-36137236298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                     lfqrlw+++Dei++LqG++ f++++ +   + ++d+ afy++++ +i+++++k+qlveK+rrLKkK+++  ++++sgk+ +f+++hdq +f+ls 
  Spipo6G0015400 137 LFQRLWTDDDEIAILQGFLAFTSQRSSslhHNHQDTGAFYDQIRARIQLDFNKNQLVEKLRRLKKKYRNITNRIRSGKDYAFKSPHDQAAFDLSD 231
                     79**********************9996667788************************************************************* PP

          DUF573  94 kiWgs 98 
                     kiWgs
  Spipo6G0015400 232 KIWGS 236
                     ***95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.6E-34138235IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MPSPAAAAAA AAAGGEGPAG SFLEGLEDLE NEDQTAAAGE EPAAGLDDEE VSSPSTSSAE  60
IAAAAAAVAA AENHSSNGGH RLSAASDPVP SSADKPAAAE EDGSAAPDGK RRRTEGGSEP  120
GKGPPAAAAA AEDSRRLFQR LWTDDDEIAI LQGFLAFTSQ RSSSLHHNHQ DTGAFYDQIR  180
ARIQLDFNKN QLVEKLRRLK KKYRNITNRI RSGKDYAFKS PHDQAAFDLS DKIWGSATAA  240
AAPDDDDDDD DDGGDRWKRH RKRPATAAAT AAAPAEVKAT GGPMPVPNVI EETMRSCLSP  300
MFKELLHCAT PPAAVAGGWG GLGLSPLPFG LGGPAANAKA PTAVVDAKWR KQQILELEVF  360
SRRIDLMQEQ IKLVLAELRS AR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241430.13e-85PREDICTED: probable transcription factor At3g04930
SwissprotF4K5T42e-59STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A1U7YNC56e-84A0A1U7YNC5_NELNU; probable transcription factor At3g04930
TrEMBLA0A200R1M11e-85A0A200R1M1_9MAGN; Uncharacterized protein
STRINGXP_010241430.11e-84(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-40DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. GarcĂ­a-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]