PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0057000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family TCP
Protein Properties Length: 286aa    MW: 29608 Da    PI: 9.655
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0057000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.71e-3824106284
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasn 84 
                     a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+pai  +tgt++ +as++++++ s+s++ 
  Spipo4G0057000  24 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPAIVSATGTGTVPASAMTSAAGSVSHQG 106
                     789***************************************************************99988844444444332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-3229170IPR005333Transcription factor, TCP
PROSITE profilePS5136927.5593084IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MASAGDRDNQ GGAVNEKEEG KKLAPKRSSN KDRHTKVDGR GRRIRMPALC AARIFQLTRE  60
LGHKSDGETI QWLLQQAEPA IVSATGTGTV PASAMTSAAG SVSHQGATVS AGLHQKVDEL  120
GESIGSAARA NWAMLGGAVG RWPQAGGLTP GFIHATAIPS TSNLGSAAAA AAGFMPRIGV  180
HGLEMQGAGL GPMGFASILG GGAQQLPGLE LGLSQEGHIG VLNPQSLSNY YRQMGQGRGG  240
GGGGGSEQMQ HQQLPHRHHE RLPQQQQAQR QEQQSPLEKD DSQSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249094.11e-107PREDICTED: transcription factor TCP20-like
RefseqXP_010249095.11e-107PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD52e-66TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A1U7ZCX51e-105A0A1U7ZCX5_NELNU; transcription factor TCP20-like
STRINGXP_010249094.11e-106(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.12e-67TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]