PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0097200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 230aa    MW: 25075.5 Da    PI: 5.8735
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0097200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.31.6e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++Cvl++++     p++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++l+q+
  Spipo2G0097200   2 SCNGCRVLRKGCSESCVLRQCLrmiesPEAQGHATLFVAKFFGRAGLMSFVSAVPEPQRPALFQSLLFEACGRTINPVNGAVGLLWSGNWHLCQA 96 
                     6*************************9******************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  Spipo2G0097200  97 AVETVLR 103
                     *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.5981107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCVLR QCLRMIESPE AQGHATLFVA KFFGRAGLMS FVSAVPEPQR  60
PALFQSLLFE ACGRTINPVN GAVGLLWSGN WHLCQAAVET VLRGGTLRPL PQDEEPQVDC  120
FFEAAGSFYE PSVRMLCSRQ QDSLKRPRMS SPMREGDNEG RRITGGARPS APSNLELRLP  180
GEVDDERLQK RPGTPSEESG TTCAESGDWA TAACQQRQEE APLLLNLFA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708970.17e-76PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE83e-71LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A1D1Y3L39e-97A0A1D1Y3L3_9ARAE; LOB domain-containing protein 39
STRINGEOX916425e-74(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-73LOB domain-containing protein 39