PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo26G0027000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 620aa    MW: 68495.5 Da    PI: 6.8412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo26G0027000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.9e-13465511455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Spipo26G0027000 465 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYINDLQ 511
                      799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-5152239IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.282461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-15464515No hitNo description
SuperFamilySSF474596.15E-19464524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10465511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-18465524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-17467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKTEKGTVGV GFWEEEDKAM AVAVLGAKAF DYITTVHVSS EGLTAIGGDS DLQEKLVALV  60
DGPNPSGFTW NYAIFWQISR SATGDIVLGW GDGHCREPRQ REDSSQRGWQ QHLDEAHQHM  120
RKQVLQKLSV FAGGSDDENY ALRLDRVTDT EMFFLASMYF SFPRGEGAPG KVFASGNHLW  180
ISDALPNSSL SDFCVRGFLA RSTGMRTIVL VPTTNGVLEL GSVAPVSENA EAMQTIKSIL  240
SSGPAKPVPG GSDRGDSQIT AANASSFGFM PRGEERPRIF GKDLNLGQPQ TDERLSVAKM  300
EEQRQQWDLE SSNGGGGDRI RSPDSRKDLH LLNWTQSHRV GANQAHVNNQ QKFSSGVVIT  360
EADACRRPFG HYSNGAREDP QQSHFPPKRQ RSLPAPLTQP RQIDFSRAAA TSMAVPVESQ  420
PNSLQAEQSG ANLASSKEDR PFPPEERRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR  480
FYALRAVVPN ISKMDKASLL GDAISYINDL QRKLKEMESE RERFSDVTVV DARKRVECPF  540
VDVQVVHNEV VVHVSCPLET HPVSKVISVF NEEQIDVVDS KISAGSDTVF HTFVVRPQGS  600
EQLTKDRLVA ALSREANTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-26492416193Transcription factor MYC3
4rqw_B7e-26492416193Transcription factor MYC3
4rru_A9e-265223648227Transcription factor MYC3
4rs9_A7e-26492416193Transcription factor MYC3
4ywc_A9e-265223648227Transcription factor MYC3
4ywc_B9e-265223648227Transcription factor MYC3
4yz6_A7e-26492416193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446454RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242395.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242396.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242397.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242398.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242399.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLA0A068UK620.0A0A068UK62_COFCA; Uncharacterized protein
STRINGVIT_15s0046g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-137bHLH family protein